Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs6956234 chr7:105149707 A/G 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs6956249 chr7:105149743 A/T 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs6957424 chr7:105167322 A/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs6960230 chr7:66352331 T/C 0.000247 178 24.62 29.95 33.17 KM Plot
PCPG rs6961233 chr7:105150469 C/T 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs6969426 chr7:105147150 G/A 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs6974046 chr7:66343304 A/G 0.000263 176 24.85 29.95 33.17 KM Plot
PCPG rs6977748 chr7:105167462 T/G 6.94E-5 174 20.28 28.95 2.28 KM Plot
PCPG rs6981647 chr8:126248730 G/A 2.95E-5 178 25.35 28.3 4.17 KM Plot
PCPG rs6988927 chr8:53837496 T/C 0.00046 172 24.23 27.27 6.1 KM Plot
PCPG rs6991936 chr8:121423321 C/T 4.06E-6 178 27.2 25.33 19.87 KM Plot
PCPG rs6996695 chr8:77540581 A/G 0 178 2.93 17.93 25.87 KM Plot
PCPG rs7004427 chr8:121508150 C/T 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs7010385 chr8:126241741 G/A 0.000297 177 25.77 25.47 4.17 KM Plot
PCPG rs7011049 chr8:53834012 C/A 0.000327 178 24.85 27.2 6.1 KM Plot